Deprecated: please see new documentation site.


This page is not complete yet. It represents what will soon become a listing of all software available on the LONI systems. Currently, only louie has been completed as a proof of concept.

In the meantime, the following is a list of internal documentation for software available on IBM Power5 Clusters:

application

name version softenv key Documentation
ANSYS LS-DYNA is a premier software package for explicit nonlinear structural simulation with finite element pre- and post-processor. ANSYS LS-DYNA 11.0 +ansys-lsdyna-11.0 [ vendor ]
Autodock AutoDock is a suite of automated docking tools. It is designed to predict how small molecules. 4.0.1-gcc3.4.6 +autodock4-gcc [ vendor ]
AutoDock is a suite of automated docking tools. It is designed to predict how small molecules. Autodock 4.0.1-intel10.1 +autodock4-intel10.1 [ vendor ]
Free MatLab replacementOctave 2.1.73. +octave-2.1.73
a suite of simulation-based debugging and profiling tools for programs running on Linux, functions include memory check, cache grind, etc.valgrind 3.2.3 +valgrind-3.2.3

Applications Chemistry

name version softenv key Documentation
A parallelized plane wave/pseudopotential implementation of Density Functional Theory. CPMD 3.11.1 +cpmd-3.11.1 [ internal ][ vendor ]
Gamess +gamess-socket [ internal ]
Gaussian predicts energies, molecular structures, etc. starting from basic laws of quantum mechanics. Gaussian 03 +gaussian-03 [ internal ][ vendor ]
A computational biochemistry package. NAMD 2.6 built with mvapich. +namd-2.6-mvapich [ internal ][ vendor ]
A computational biochemistry package. NAMD 2.6 built with mvapich2. +namd_2.6-mvapich2 [ internal ][ vendor ]
A computational biochemistry package. NAMD 2.6_Linux-i686 +NAMD_2.6_Linux-i686 [ internal ][ vendor ]
A computational biochemistry package. NAMD 2.6_Linux-i686-TCP +NAMD_2.6_Linux-i686-TCP [ internal ][ vendor ]
A computational chemistry package. NWChem 5.0. +nwchem-5.0 [ internal ][ vendor ]

Applications Materials Science

name version softenv key Documentation
A molecular dynamics codelammps 2.1.4 +lammps

Applications Visualization

name version softenv key Documentation
A graphical user interface designed to help prepare input for submission to Gaussian and to examine graphically the output that Gaussian produces.gaussianview 4.1.2. +gaussianview-4.1.2
A portable command-line driven interactive data and plotting utility. Gnuplot 4.2.0-gcc3.4.6 +gnuplot-4.2.0-gcc3.4.6 [ vendor ]
visit +visit

Code Optimization and Performance Tools

name version softenv key Documentation
Message Passing Interface Profiler mpiP 3.1.2 +mpiP-mvapich-1.0-intel10.1 [ internal ][ vendor ]
A portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, Java, Python. TAU 2.16-gcc3.4.6 +tau-2.16-gcc3.4.6 [ vendor ]
TAU Performance System® is a portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, Java, Python. TAU - Tuning and Analysis Utilities 2.17.3 +tau-2.17.3-mvapich-1.0.1 [ internal ][ vendor ]

Compilers/Languages

name version softenv key Documentation
Apache Ant 1.6.5 +apache-ant-1.6.5-r1
A portable compilation utility written in java. Apache Ant 1.6.5 +apache-ant-1.6.5 [ vendor ]
GNU gcc compiler gcc 4.3.0 +gcc-4.3.0
gcc 4.2.1 with 32 bit libraries and associated tools gcc lib32 4.2.1 +gcc-4.2.1-with-lib32
gcc 4.2.1 with 64 bit libraries and associated tools gcc lib64 4.2.1 +gcc-4.2.1-with-lib64
Free compilers from GNU. GNU Compilers 4.2.0. +gnu-4.2.0 [ vendor ]
The compilers for C/C++ from Intel. Intel C/C++ Compiler 10.0 +intel-cc-10.0 [ vendor ]
The compilers for C/C++ from Intel. Intel C/C++ Compiler 10.1 +intel-cc-10.1 [ vendor ]
The compilers for C/C++ from Intel.Intel C/C++ Compiler 9.1 +intel-cc-9.1 [ vendor ]
The Fortran compilers from Intel. Intel Fortran Compilers 10.0 +intel-fc-10.0 [ vendor ]
The Fortran compilers from Intel. Intel Fortran Compilers 10.1 +intel-fc-10.1 [ vendor ]
The Fortran compilers from Intel.Intel Fortran Compilers 9.1 +intel-fc-9.1 [ vendor ]
The Java 2 Software Development Kit contains the compiler and virtual machine runtime for java. Java 2 SDK 1.4.2_12 +j2sdk1.4.2_12 [ vendor ]
The Java 2 Software Development Kit contains the compiler and virtual machine runtime for java. Java 2 SDK 1.6.0_06 +jdk1.6.0_06 [ vendor ]
Python interpreter Python 2.4.3-gcc +python-2.4.3-gcc [ vendor ]
Portland Groups high-performance compilers and tools. The Portland Group Compilers 6.0. +portland-6.0 [ vendor ]
Portland Groups high-performance compilers and tools. The Portland Group Compilers 6.1 +portland-6.1 [ vendor ]

Grid Services

name version softenv key Documentation
Condor-G 6.8.4 +condor-g-6.8.4-r1
MyCluster/Condor +gridshell
MyCluster/Condor +mycluster

Grid Services

name version softenv key Documentation
Condor 6.8.4 +condor-6.8.4-r1
Condor 6.9.3 +condor-6.9.3-r1
The open source Globus® Toolkit is a fundamental enabling technology for the Grid, letting people share computing power, databases, and other tools securely online across corporate, institutional, and geographic boundaries without sacrificing local autonomy. The toolkit includes software services and libraries for resource monitoring, discovery, and management, plus security and file management.globus 4.0.8 +globus-4.0.8
MyCluster 0.9.9 +mycluster-0.9.9
MyCluster/Condor 0.9.9-4 +gridshell-0.9.9-4
Teragrid Copy solution 1.0.0-r2 +tgcp-1.0.0-r2
TeraGrid Policy 0.2 +tg-policy-0.2-r1
TeraGrid Proxy Tools 0.9.1 +tgproxy-0.9.1-r1
TeraGrid Resource Identity 2.0.3 +tgresid-2.0.3-r1
tgusage 2.9 +tgusage-2.9

I/O Libraries

name version softenv key Documentation
Hierarchical Data Format is software for converting, visualizing, and storing data in a portable way. HDF5 1.6.5_gnu +hdf5-1.6.5_gnu [ internal ][ vendor ]
Hierarchical Data Format is software for converting, visualizing, and storing data in a portable way. HDF5 1.6.5_intel10.1 +hdf5-1.6.5_intel10.1 [ internal ][ vendor ]
Hierarchical Data Format is software for converting, visualizing, and storing data in a portable way. HDF5 1.6.5_intel10.1 with MPI I/O enabled. +hdf5-1.6.5-mvapich2-0.98-intel10.1 [ internal ][ vendor ]
Hierarchical Data Format is software for converting, visualizing, and storing data in a portable way. HDF5 1.6.5_intel9.1 +hdf5-1.6.5_intel9.1 [ internal ][ vendor ]
NetCDF stands for Network Common Data Form and is an interface/implementation of a library for storing data. NetCDF 3.5.1-gnu +netcdf-3.6.2-pgi [ vendor ]
NetCDF stands for Network Common Data Form and is an interface/implementation of a library for storing data. NetCDF 3.5.1-gnu +netcdf-3.6.2-gnu [ vendor ]
NetCDF stands for Network Common Data Form and is an interface/implementation of a library for storing data. NetCDF 3.6.2 +netcdf-3.6.2-intel.9.1 [ vendor ]
NetCDF stands for Network Common Data Form and is an interface/implementation of a library for storing data. NetCDF 3.6.2 +netcdf-3.6.2-intel.10.1 [ vendor ]

library

name version softenv key Documentation
hypre 2.0.0 intel9.1 mvapich1 0.98 +hypre-2.0.0_intel-9.1-mvapich1-0.98
The IMSL library is a collection of routines and functions useful in mathematical analysis and application development. IMSL 6.0 +imsl-6.0 [ vendor ]
Openbabl is a continuation of the babel program used to convert file formats used by chemists. Open Babel 2.1.0-gcc3.4.6 +openbabel-2.1.0-gcc3.4.6 [ vendor ]

Mathematical Libraries

name version softenv key Documentation
Automatically Tuned Linear Algebra Software Atlas gcc3.4.6. +atlas [ internal ][ vendor ]
Basic Linear Algebra Communication Subprograms BLACS 1.1-gnu +blacs-mvapich2-gnu [ vendor ]
Basic Linear Algebra Communication Subprograms BLACS 1.1-gnu +blacs-mvapich-gnu [ vendor ]
Basic Linear Algebra Communication Subprograms BLACS 1.1-intel9.1 +blacs-mvapich-intel9.1 [ vendor ]
Basic Linear Algebra Communication Subprograms BLACS 1.1-intel9.1 +blacs-mvapich2-intel9.1 [ vendor ]
Basic Linear Algebra Communication Subprograms BLACS blacs-mvapich-1.0-intel-10.1 +blacs-mvapich-1.0-intel-10.1 [ vendor ]
FFTW 3.1.2 GNU +fftw-3.1.2-gnu
FFTW 3.1.2 intel 10.1. +fftw-3.1.2-intel10.1
FFTW 3.1.2 intel9.1 +fftw-3.1.2-intel9.1
The GNU Scientific Library. GSL 1.9-gcc +gsl-1.9-gcc [ vendor ]
The GNU Scientific Library. GSL 1.9-gcc 3.4.2. +gsl-1.9-gcc-3.4.2 [ vendor ]
The GNU Scientific Library. GSL 1.9-intel9.1 +gsl-1.9-intel9.1 [ vendor ]
Highly optimized thread-safe math routines for high performance computing. Intel Math Kernel Library 10.1 +mkl-10.1 [ internal ][ vendor ]
Highly optimized thread-safe math routines for high performance computing. Intel Math Kernel Library 9.0 +mkl-9.0 [ internal ][ vendor ]
Highly optimized thread-safe math routines for high performance computing. Intel Math Kernel Library 9.1 +mkl-10.0 [ internal ][ vendor ]
Highly optimized thread-safe math routines for high performance computing. Intel Math Kernel Library 9.1 +mkl-9.1 [ internal ][ vendor ]
A pointer to the latest version.Intel Math Kernel Library Latest, +intel-mkl [ internal ][ vendor ]
Linear Algebra PACKage LAPACK 3.1.1-g77 +lapack-3.1.1-g77 [ vendor ]
Linear Algebra PACKage LAPACK 3.1.1-intel-10.1 +lapack-3.1.1-intel-10.1 [ vendor ]
Linear Algebra PACKage LAPACK 3.1.1-intel9.1 +lapack-3.1.1-intel9.1 [ vendor ]
Linear Algebra PACKage LAPACK 3.1.1-mvapich-1.0-intel-10.1 +lapack-3.1.1-mvapich-1.0-intel-10.1 [ vendor ]
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. PETSc 2.2.1-gnu-mvapich. +petsc-2.2.1-gnu-mvapich [ internal ][ vendor ]
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. PETSc 2.3.3-gnu-mvapich +petsc-2.3.3-gnu-mvapich [ internal ][ vendor ]
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. PETSc 2.3.3-gnu-openmp +petsc-2.3.3-gnu-openmp [ internal ][ vendor ]
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. PETSc 2.3.3-intel9.1-mvapich2 +petsc-2.3.3-intel9.1-mvapich2 [ internal ][ vendor ]
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers ScaLAPACK 1.8-gnu +scalapack-mvapich2-gnu [ vendor ]
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers ScaLAPACK 1.8-intel9.1 +scalapack-mvapich-intel9.1 [ vendor ]
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers ScaLAPACK scalapack-1.8-mvapich-1.0-intel-10.1 +scalapack-mvapich-1.0-intel-10.1 [ vendor ]

Parallel Programming Libraries

name version softenv key Documentation
Mpich is a free, portable implementation of the message passing libraries. Mpich 1.2.7p1-Intel-fc-9.1+gcc-3.4.6 +mpich-1.2.7p1-Intel-fc-9.1+gcc-3.4.6 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 0.98-gcc +mvapich-0.98-gcc [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 0.98-intel10.1 +mvapich-0.98-intel10.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 0.98-intel9.1 +mvapich-0.98-intel9.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 0.98-pgi6.1 +mvapich-0.98-pgi6.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 0.98-pgi6.1 +mvapich-1.0-gcc3.4.6 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 1.0 beta intel 9.1 +mvapich-1.0-beta-intel-9.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 1.0beta-intel10.1 +mvapich-1.0-pgi6.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 1.0beta-intel10.1 +mvapich-1.0-intel10.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich 1.0beta-intel10.1 +mvapich-1.01-intel10.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries.Mvapich LATEST +mvapich [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries.Mvapich LATEST +mvapich2 [ vendor ]
Mvapich2 is a free, portable implementation of the message passing libraries. Mvapich2 0.98-gcc +mvapich2-0.98-gcc [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich2 0.98-intel10.1 +mvapich2-0.98-intel10.1 [ vendor ]
Mvapich2 is a free, portable implementation of the message passing libraries. Mvapich2 0.98-intel9.1 +mvapich2-0.98-intel9.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich2 1.01-intel10.1 +mvapich2-1.01-intel10.1 [ vendor ]
Mvapich2 is a free, portable implementation of the message passing libraries. Mvapich2 1.01-intel9.1 +mvapich2-1.01-intel10.0 [ vendor ]
Mvapich2 is a free, portable implementation of the message passing libraries. Mvapich2 1.01-intel9.1. +mvapich2-1.01-intel9.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich2 1.02p1-intel10.1 +mvapich2-1.2rc1-intel10.1-debug [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich2 1.02p1-intel10.1 +mvapich2-1.2rc1-intel10.1 [ vendor ]
Mvapich2 is a free, portable implementation of the message passing libraries. Mvapich2 1.02p1-intel10.1. +mvapich2-1.02p1-intel10.1 [ vendor ]
Mvapich is a free, portable implementation of the message passing libraries. Mvapich2 1.2rc2-intel10.1 +mvapich2-1.2rc2-intel10.1 [ vendor ]
OpenMPI 1.2.2-gcc +openmpi-1.2.2-gcc
OpenMPI 1.2.2-intel9.1 +openmpi-1.2.2-intel9.1
OpenMPI 1.2.4-intel10.1 +openmpi-1.2.4-intel10.1
A version of python with MPI support built in. pyMPI 2.4b4 +pyMPI-2.4b4 [ vendor ]

unknown

name version softenv key Documentation
@teragrid-basic
@teragrid-dev
@intel-compilers
No description yet for 6.4.2. +Mesa-6.4.2
Cactus utilities, such as GetCactus, and environmental variablescactus +cactus Internal
git is a version control softwaregit 1.5.4 +git-1.5.4
GX Map 0.5.3.2 +gx-map-0.5.3.2-r1
Bayesian phylogenetics analysis Mrbayes 3.1.2 +mrbayes
Pacman 3.20 +pacman
Pacman 3.20 +pacman-3.20-r1
quantum monte carlo simulations qumax 0.95 +qumax-0.95
Softenv 1.6.2 +softenv-1.6.2
SRB Client 3.4.1 +srb-client-3.4.1-r2

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